IL_6ZXH_110
3D structure
- PDB id
- 6ZXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a late human pre-40S ribosomal subunit - State H2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GACAGGA(OMU)UG*CUCGAUUC
- Length
- 18 nucleotides
- Bulged bases
- 6ZXH|1|2|G|1285
- QA status
- Modified nucleotides: OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZXH_110 not in the Motif Atlas
- Geometric match to IL_4V88_447
- Geometric discrepancy: 0.3155
- The information below is about IL_4V88_447
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_34780.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
6ZXH|1|2|G|1281
6ZXH|1|2|A|1282
6ZXH|1|2|C|1283
6ZXH|1|2|A|1284
6ZXH|1|2|G|1285
6ZXH|1|2|G|1286
6ZXH|1|2|A|1287
6ZXH|1|2|OMU|1288
6ZXH|1|2|U|1289
6ZXH|1|2|G|1290
*
6ZXH|1|2|C|1309
6ZXH|1|2|U|1310
6ZXH|1|2|C|1311
6ZXH|1|2|G|1312
6ZXH|1|2|A|1313
6ZXH|1|2|U|1314
6ZXH|1|2|U|1315
6ZXH|1|2|C|1316
Current chains
- Chain 2
- pre-18S ribosomal RNA
Nearby chains
- Chain K
- 40S ribosomal protein S10
- Chain M
- 40S ribosomal protein S12
- Chain d
- 40S ribosomal protein S29
- Chain f
- Ubiquitin-40S ribosomal protein S27a
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