IL_6ZXH_111

3D structure

PDB id

6ZXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State H2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

G(OMU)G*CC

Length

5 nucleotides

Bulged bases

6ZXH|1|2|OMU|1326

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZXH_111 not in the Motif Atlas

Homologous match to IL_8C3A_455

Geometric discrepancy: 0.0985

The information below is about IL_8C3A_455

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

94

Unit IDs

6ZXH|1|2|G|1325
6ZXH|1|2|OMU|1326
6ZXH|1|2|G|1327
*
6ZXH|1|2|C|1502
6ZXH|1|2|C|1503

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain K

40S ribosomal protein S10

Chain d

40S ribosomal protein S29

Chain j

Probable RNA-binding protein EIF1AD