IL_7A01_003

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAAA*UGACG

Length

9 nucleotides

Bulged bases

7A01|1|K3|A|516

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7A01_003 not in the Motif Atlas

Geometric match to IL_5AOX_003

Geometric discrepancy: 0.3142

The information below is about IL_5AOX_003

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

7A01|1|K3|C|37
7A01|1|K3|A|38
7A01|1|K3|A|39
7A01|1|K3|A|40
*
7A01|1|K3|U|514
7A01|1|K3|G|515
7A01|1|K3|A|516
7A01|1|K3|C|517
7A01|1|K3|G|518

Current chains

Chain K3

18S RIBOSOMAL RNA

Nearby chains

Chain d3

Ribosomal protein S9 (Predicted)

Chain j3

40S ribosomal protein S4,40S ribosomal protein S4