IL_7A01_004
3D structure
- PDB id
- 7A01 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GAUUAAG*CGC
- Length
- 10 nucleotides
- Bulged bases
- 7A01|1|K3|U|44, 7A01|1|K3|A|46
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7A01_004 not in the Motif Atlas
- Homologous match to IL_4V88_387
- Geometric discrepancy: 0.3578
- The information below is about IL_4V88_387
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_77761.1
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
7A01|1|K3|G|41
7A01|1|K3|A|42
7A01|1|K3|U|43
7A01|1|K3|U|44
7A01|1|K3|A|45
7A01|1|K3|A|46
7A01|1|K3|G|47
*
7A01|1|K3|C|479
7A01|1|K3|G|480
7A01|1|K3|C|481
Current chains
- Chain K3
- 18S RIBOSOMAL RNA
Nearby chains
- Chain T3
- Ribosomal protein S23
- Chain d3
- Ribosomal protein S9 (Predicted)
Coloring options: