IL_7A01_012
3D structure
- PDB id
- 7A01 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GGAUAAC*GCUAAUAC
- Length
- 15 nucleotides
- Bulged bases
- 7A01|1|K3|U|172
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7A01_012 not in the Motif Atlas
- Homologous match to IL_4V88_394
- Geometric discrepancy: 0.3423
- The information below is about IL_4V88_394
- Detailed Annotation
- tWH-tWH-tHW-tHW
- Broad Annotation
- No text annotation
- Motif group
- IL_80604.3
- Basepair signature
- cWW-cWW-tWH-tWH-tHW-L-R-cWW
- Number of instances in this motif group
- 4
Unit IDs
7A01|1|K3|G|145
7A01|1|K3|G|146
7A01|1|K3|A|147
7A01|1|K3|U|148
7A01|1|K3|A|149
7A01|1|K3|A|150
7A01|1|K3|C|151
*
7A01|1|K3|G|167
7A01|1|K3|C|168
7A01|1|K3|U|169
7A01|1|K3|A|170
7A01|1|K3|A|171
7A01|1|K3|U|172
7A01|1|K3|A|173
7A01|1|K3|C|174
Current chains
- Chain K3
- 18S RIBOSOMAL RNA
Nearby chains
- Chain I5
- 40S ribosomal protein S24
- Chain b3
- 40S ribosomal protein S6
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