IL_7A01_030
3D structure
- PDB id
- 7A01 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- AGGGCAAG*CU
- Length
- 10 nucleotides
- Bulged bases
- 7A01|1|K3|A|605
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7A01_030 not in the Motif Atlas
- Homologous match to IL_4V88_413
- Geometric discrepancy: 0.3327
- The information below is about IL_4V88_413
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_41203.1
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 10
Unit IDs
7A01|1|K3|A|599
7A01|1|K3|G|600
7A01|1|K3|G|601
7A01|1|K3|G|602
7A01|1|K3|C|603
7A01|1|K3|A|604
7A01|1|K3|A|605
7A01|1|K3|G|606
*
7A01|1|K3|C|636
7A01|1|K3|U|637
Current chains
- Chain K3
- 18S RIBOSOMAL RNA
Nearby chains
- Chain W3
- S5 DRBM domain-containing protein
- Chain d3
- Ribosomal protein S9 (Predicted)
- Chain s3
- 40S RIBOSOMAL PROTEIN ES30
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