IL_7A01_039

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AC*GAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7A01_039 not in the Motif Atlas

Homologous match to IL_4V88_423

Geometric discrepancy: 0.2867

The information below is about IL_4V88_423

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_68140.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

19

Unit IDs

7A01|1|K3|A|802
7A01|1|K3|C|803
*
7A01|1|K3|G|860
7A01|1|K3|A|861
7A01|1|K3|A|862
7A01|1|K3|U|863

Current chains

Chain K3

18S RIBOSOMAL RNA

Nearby chains

Chain G3

Ribosomal protein S11

Chain J5

Ribosomal protein S15a

Chain P3

40S RIBOSOMAL PROTEIN ES7

Chain T3

Ribosomal protein S23