3D structure

PDB id
7A01 (explore in PDB, NAKB, or RNA 3D Hub)
Description
The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
GGAGUAUG*UGAAAC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7A01_053 not in the Motif Atlas
Homologous match to IL_4V88_440
Geometric discrepancy: 0.1402
The information below is about IL_4V88_440
Detailed Annotation
8x6 Sarcin-Ricin with inserted Y; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_41756.1
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
Number of instances in this motif group
5

Unit IDs

7A01|1|K3|G|1168
7A01|1|K3|G|1169
7A01|1|K3|A|1170
7A01|1|K3|G|1171
7A01|1|K3|U|1172
7A01|1|K3|A|1173
7A01|1|K3|U|1174
7A01|1|K3|G|1175
*
7A01|1|K3|U|1186
7A01|1|K3|G|1187
7A01|1|K3|A|1188
7A01|1|K3|A|1189
7A01|1|K3|A|1190
7A01|1|K3|C|1191

Current chains

Chain K3
18S RIBOSOMAL RNA

Nearby chains

Chain T3
Ribosomal protein S23
Chain X3
60s ribosomal protein l41

Coloring options:


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