IL_7A01_061

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUGCAU*AUGC

Length

10 nucleotides

Bulged bases

7A01|1|K3|C|1331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7A01_061 not in the Motif Atlas

Geometric match to IL_4V88_471

Geometric discrepancy: 0.3743

The information below is about IL_4V88_471

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

7A01|1|K3|G|1328
7A01|1|K3|U|1329
7A01|1|K3|G|1330
7A01|1|K3|C|1331
7A01|1|K3|A|1332
7A01|1|K3|U|1333
*
7A01|1|K3|A|1498
7A01|1|K3|U|1499
7A01|1|K3|G|1500
7A01|1|K3|C|1501

Current chains

Chain K3

18S RIBOSOMAL RNA

Nearby chains

Chain E3

S10_plectin domain-containing protein

Chain H3

ribosomal protein uS14

Chain I3

Ribosomal_S10 domain-containing protein

Chain Y3

Ribosomal protein S3