IL_7A01_079

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGAU*AGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7A01_079 not in the Motif Atlas

Geometric match to IL_4V88_468

Geometric discrepancy: 0.1478

The information below is about IL_4V88_468

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

7A01|1|K3|C|1717
7A01|1|K3|G|1718
7A01|1|K3|A|1719
7A01|1|K3|U|1720
*
7A01|1|K3|A|1813
7A01|1|K3|G|1814
7A01|1|K3|A|1815
7A01|1|K3|G|1816

Current chains

Chain K3

18S RIBOSOMAL RNA

Nearby chains

Chain T3

Ribosomal protein S23

Chain X3

60s ribosomal protein l41

Chain e2

Large subunit ribosomal RNA; LSU rRNA