IL_7A01_080
3D structure
- PDB id
- 7A01 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UUG*UA
- Length
- 5 nucleotides
- Bulged bases
- 7A01|1|K3|U|1721
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7A01_080 not in the Motif Atlas
- Homologous match to IL_4V88_469
- Geometric discrepancy: 0.1765
- The information below is about IL_4V88_469
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_83039.19
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 123
Unit IDs
7A01|1|K3|U|1720
7A01|1|K3|U|1721
7A01|1|K3|G|1722
*
7A01|1|K3|U|1812
7A01|1|K3|A|1813
Current chains
- Chain K3
- 18S RIBOSOMAL RNA
Nearby chains
- Chain T3
- Ribosomal protein S23
- Chain X3
- 60s ribosomal protein l41
- Chain e2
- Large subunit ribosomal RNA; LSU rRNA
- Chain k2
- eL14
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