IL_7A01_090
3D structure
- PDB id
- 7A01 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- AUCUC*GAUCU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7A01_090 not in the Motif Atlas
- Homologous match to IL_7RQB_114
- Geometric discrepancy: 0.1619
- The information below is about IL_7RQB_114
- Detailed Annotation
- Symmetric double minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_58103.6
- Basepair signature
- cWW-cWS-L-tSW-L-cWW
- Number of instances in this motif group
- 8
Unit IDs
7A01|1|d2|A|32
7A01|1|d2|U|33
7A01|1|d2|C|34
7A01|1|d2|U|35
7A01|1|d2|C|36
*
7A01|1|d2|G|41
7A01|1|d2|A|42
7A01|1|d2|U|43
7A01|1|d2|C|44
7A01|1|d2|U|45
Current chains
- Chain d2
- 5S RIBOSOMAL RNA
Nearby chains
- Chain G2
- 60S ribosomal protein L5
- Chain Y2
- Ribosomal protein L11
- Chain e2
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: