IL_7A01_091
3D structure
- PDB id
- 7A01 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GUUAGUAC*GGAAUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7A01_091 not in the Motif Atlas
- Homologous match to IL_5TBW_377
- Geometric discrepancy: 0.3135
- The information below is about IL_5TBW_377
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
7A01|1|d2|G|71
7A01|1|d2|U|72
7A01|1|d2|U|73
7A01|1|d2|A|74
7A01|1|d2|G|75
7A01|1|d2|U|76
7A01|1|d2|A|77
7A01|1|d2|C|78
*
7A01|1|d2|G|98
7A01|1|d2|G|99
7A01|1|d2|A|100
7A01|1|d2|A|101
7A01|1|d2|U|102
7A01|1|d2|A|103
7A01|1|d2|C|104
Current chains
- Chain d2
- 5S RIBOSOMAL RNA
Nearby chains
- Chain 62
- 60S RIBOSOMAL PROTEIN EL20
- Chain 72
- eL21
- Chain G2
- 60S ribosomal protein L5
- Chain U2
- uL30
- Chain X2
- Ribosomal protein L10 (Predicted)
- Chain e2
- Large subunit ribosomal RNA; LSU rRNA
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