IL_7A01_094

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

7A01|1|h2|C|150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7A01_094 not in the Motif Atlas

Homologous match to IL_5TBW_002

Geometric discrepancy: 0.4972

The information below is about IL_5TBW_002

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.13

Basepair signature

cWW-L-cWW

Number of instances in this motif group

40

Unit IDs

7A01|1|e2|C|6
7A01|1|e2|C|7
*
7A01|1|h2|G|149
7A01|1|h2|C|150
7A01|1|h2|G|151

Current chains

Chain e2

28S RIBOSOMAL RNA

Chain h2

5.8S RIBOSOMAL RNA

Nearby chains

Chain 12

Ribosomal protein L15

Chain V2

60S RIBOSOMAL PROTEIN EL8

Chain m2

Uncharacterized protein