3D structure

PDB id
7A01 (explore in PDB, NAKB, or RNA 3D Hub)
Description
The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
GAG*CAC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7A01_115 not in the Motif Atlas
Geometric match to IL_3DIL_006
Geometric discrepancy: 0.1883
The information below is about IL_3DIL_006
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_87907.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
179

Unit IDs

7A01|1|e2|G|462
7A01|1|e2|A|463
7A01|1|e2|G|464
*
7A01|1|e2|C|691
7A01|1|e2|A|692
7A01|1|e2|C|693

Current chains

Chain e2
28S RIBOSOMAL RNA

Nearby chains

Chain J2
Uncharacterized protein
Chain T2
60S ribosomal protein L6

Coloring options:


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