IL_7A01_115

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAG*CAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7A01_115 not in the Motif Atlas

Geometric match to IL_3DIL_006

Geometric discrepancy: 0.1883

The information below is about IL_3DIL_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

7A01|1|e2|G|462
7A01|1|e2|A|463
7A01|1|e2|G|464
*
7A01|1|e2|C|691
7A01|1|e2|A|692
7A01|1|e2|C|693

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain J2

Uncharacterized protein

Chain T2

60S ribosomal protein L6