IL_7A01_117

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGUCC*GGC

Length

8 nucleotides

Bulged bases

7A01|1|e2|U|484, 7A01|1|e2|C|485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7A01_117 not in the Motif Atlas

Geometric match to IL_3TD0_002

Geometric discrepancy: 0.2669

The information below is about IL_3TD0_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

7A01|1|e2|G|482
7A01|1|e2|G|483
7A01|1|e2|U|484
7A01|1|e2|C|485
7A01|1|e2|C|486
*
7A01|1|e2|G|670
7A01|1|e2|G|671
7A01|1|e2|C|672

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain J2

Uncharacterized protein

Chain t2

uL4