IL_7A01_118
3D structure
- PDB id
- 7A01 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GCC*GGCGAC
- Length
- 9 nucleotides
- Bulged bases
- 7A01|1|e2|C|665, 7A01|1|e2|A|667
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7A01_118 not in the Motif Atlas
- Geometric match to IL_3C3Z_002
- Geometric discrepancy: 0.3951
- The information below is about IL_3C3Z_002
- Detailed Annotation
- Decoding loop related
- Broad Annotation
- Decoding loop related
- Motif group
- IL_31737.3
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 12
Unit IDs
7A01|1|e2|G|488
7A01|1|e2|C|489
7A01|1|e2|C|490
*
7A01|1|e2|G|663
7A01|1|e2|G|664
7A01|1|e2|C|665
7A01|1|e2|G|666
7A01|1|e2|A|667
7A01|1|e2|C|668
Current chains
- Chain e2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain J2
- Uncharacterized protein
- Chain t2
- uL4
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