3D structure

PDB id
7A01 (explore in PDB, NAKB, or RNA 3D Hub)
Description
The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
GCC*GGCGAC
Length
9 nucleotides
Bulged bases
7A01|1|e2|C|665, 7A01|1|e2|A|667
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7A01_118 not in the Motif Atlas
Geometric match to IL_3C3Z_002
Geometric discrepancy: 0.3951
The information below is about IL_3C3Z_002
Detailed Annotation
Decoding loop related
Broad Annotation
Decoding loop related
Motif group
IL_31737.3
Basepair signature
cWW-L-cWW
Number of instances in this motif group
12

Unit IDs

7A01|1|e2|G|488
7A01|1|e2|C|489
7A01|1|e2|C|490
*
7A01|1|e2|G|663
7A01|1|e2|G|664
7A01|1|e2|C|665
7A01|1|e2|G|666
7A01|1|e2|A|667
7A01|1|e2|C|668

Current chains

Chain e2
28S RIBOSOMAL RNA

Nearby chains

Chain J2
Uncharacterized protein
Chain t2
uL4

Coloring options:


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