IL_7A01_135

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGC*GGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7A01_135 not in the Motif Atlas

Geometric match to IL_5UNE_007

Geometric discrepancy: 0.2849

The information below is about IL_5UNE_007

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

7A01|1|e2|G|1074
7A01|1|e2|G|1075
7A01|1|e2|C|1076
*
7A01|1|e2|G|1234
7A01|1|e2|G|1235
7A01|1|e2|C|1236

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain R2

Ribosomal_L6e_N domain-containing protein

Chain U2

uL30

Chain t2

uL4