IL_7A01_151

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGC*GGUC

Length

7 nucleotides

Bulged bases

7A01|1|e2|G|1577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7A01_151 not in the Motif Atlas

Geometric match to IL_3SJ2_001

Geometric discrepancy: 0.2234

The information below is about IL_3SJ2_001

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

39

Unit IDs

7A01|1|e2|G|1549
7A01|1|e2|G|1550
7A01|1|e2|C|1551
*
7A01|1|e2|G|1576
7A01|1|e2|G|1577
7A01|1|e2|U|1578
7A01|1|e2|C|1579

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 32

60S RIBOSOMAL PROTEIN EL19

Chain 92

Uncharacterized protein

Chain I2

ribosomal protein eL43