IL_7A01_162
3D structure
- PDB id
- 7A01 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GAUUA*UUCUC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7A01_162 not in the Motif Atlas
- Homologous match to IL_8C3A_044
- Geometric discrepancy: 0.1409
- The information below is about IL_8C3A_044
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_05145.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 13
Unit IDs
7A01|1|e2|G|1745
7A01|1|e2|A|1746
7A01|1|e2|U|1747
7A01|1|e2|U|1748
7A01|1|e2|A|1749
*
7A01|1|e2|U|1781
7A01|1|e2|U|1782
7A01|1|e2|C|1783
7A01|1|e2|U|1784
7A01|1|e2|C|1785
Current chains
- Chain e2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain G2
- 60S ribosomal protein L5
- Chain L2
- Ribosomal protein L10 (Predicted)
- Chain X2
- Ribosomal protein L10 (Predicted)
- Chain d2
- 5S ribosomal RNA; 5S rRNA
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