IL_7A01_181

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGC*GGUG

Length

7 nucleotides

Bulged bases

7A01|1|e2|G|2343

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7A01_181 not in the Motif Atlas

Homologous match to IL_8C3A_061

Geometric discrepancy: 0.1608

The information below is about IL_8C3A_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73554.3

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

10

Unit IDs

7A01|1|e2|C|2290
7A01|1|e2|G|2291
7A01|1|e2|C|2292
*
7A01|1|e2|G|2342
7A01|1|e2|G|2343
7A01|1|e2|U|2344
7A01|1|e2|G|2345

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain J2

Uncharacterized protein

Chain h2

5.8S ribosomal RNA; 5.8S rRNA

Chain q2

uL15

Chain t2

uL4

Chain v2

eL32