IL_7A01_186

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGAAC*GAA

Length

8 nucleotides

Bulged bases

7A01|1|e2|A|2428

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7A01_186 not in the Motif Atlas

Geometric match to IL_7A0S_047

Geometric discrepancy: 0.2974

The information below is about IL_7A0S_047

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_06671.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

7A01|1|e2|U|2415
7A01|1|e2|G|2416
7A01|1|e2|A|2417
7A01|1|e2|A|2418
7A01|1|e2|C|2419
*
7A01|1|e2|G|2427
7A01|1|e2|A|2428
7A01|1|e2|A|2429

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 32

60S RIBOSOMAL PROTEIN EL19

Chain D2

ribosomal protein eL39

Chain H2

uL22