IL_7A01_187
3D structure
- PDB id
- 7A01 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CCUGAG*CGAAAGG
- Length
- 13 nucleotides
- Bulged bases
- 7A01|1|e2|A|2512, 7A01|1|e2|A|2513
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7A01_187 not in the Motif Atlas
- Geometric match to IL_4WF9_104
- Geometric discrepancy: 0.2586
- The information below is about IL_4WF9_104
- Detailed Annotation
- UAA/GAN with extra cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_91079.1
- Basepair signature
- cWW-cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 8
Unit IDs
7A01|1|e2|C|2445
7A01|1|e2|C|2446
7A01|1|e2|U|2447
7A01|1|e2|G|2448
7A01|1|e2|A|2449
7A01|1|e2|G|2450
*
7A01|1|e2|C|2509
7A01|1|e2|G|2510
7A01|1|e2|A|2511
7A01|1|e2|A|2512
7A01|1|e2|A|2513
7A01|1|e2|G|2514
7A01|1|e2|G|2515
Current chains
- Chain e2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain 92
- Uncharacterized protein
- Chain C2
- Ribosomal protein L37
- Chain D2
- ribosomal protein eL39
- Chain h2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain y2
- eL34
Coloring options: