IL_7A01_188

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

ACG*CU

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7A01_188 not in the Motif Atlas

Geometric match to IL_6DLR_003

Geometric discrepancy: 0.2148

The information below is about IL_6DLR_003

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

61

Unit IDs

7A01|1|e2|A|2477
7A01|1|e2|C|2478
7A01|1|e2|G|2479
*
7A01|1|e2|C|2499
7A01|1|e2|U|2500

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain V2

60S RIBOSOMAL PROTEIN EL8

Chain h2

5.8S ribosomal RNA; 5.8S rRNA

Chain m2

Uncharacterized protein