IL_7A01_201

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

7A01|1|e2|U|2880

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7A01_201 not in the Motif Atlas

Geometric match to IL_4V9F_063

Geometric discrepancy: 0.1658

The information below is about IL_4V9F_063

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

7A01|1|e2|C|2867
7A01|1|e2|G|2868
7A01|1|e2|U|2869
7A01|1|e2|A|2870
7A01|1|e2|A|2871
7A01|1|e2|C|2872
*
7A01|1|e2|G|2877
7A01|1|e2|G|2878
7A01|1|e2|A|2879
7A01|1|e2|U|2880
7A01|1|e2|A|2881
7A01|1|e2|A|2882
7A01|1|e2|G|2883

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain I2

ribosomal protein eL43

Chain K3

Small subunit ribosomal RNA; SSU rRNA

Chain X3

60s ribosomal protein l41