IL_7A01_209

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAAUG*CGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7A01_209 not in the Motif Atlas

Geometric match to IL_3C3Z_002

Geometric discrepancy: 0.2857

The information below is about IL_3C3Z_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_29925.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

10

Unit IDs

7A01|1|e2|G|3710
7A01|1|e2|A|3711
7A01|1|e2|A|3712
7A01|1|e2|U|3713
7A01|1|e2|G|3714
*
7A01|1|e2|C|3739
7A01|1|e2|G|3740
7A01|1|e2|C|3741

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 92

Uncharacterized protein

Chain K3

Small subunit ribosomal RNA; SSU rRNA