IL_7A01_212

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

7A01|1|e2|A|3785, 7A01|1|e2|C|3791, 7A01|1|e2|C|3810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7A01_212 not in the Motif Atlas

Homologous match to IL_8C3A_095

Geometric discrepancy: 0.1973

The information below is about IL_8C3A_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

7A01|1|e2|C|3781
7A01|1|e2|C|3782
7A01|1|e2|A|3783
7A01|1|e2|A|3784
7A01|1|e2|A|3785
7A01|1|e2|U|3786
7A01|1|e2|G|3787
7A01|1|e2|C|3788
7A01|1|e2|C|3789
7A01|1|e2|U|3790
7A01|1|e2|C|3791
7A01|1|e2|G|3792
*
7A01|1|e2|C|3808
7A01|1|e2|G|3809
7A01|1|e2|C|3810
7A01|1|e2|G|3811

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain K3

Small subunit ribosomal RNA; SSU rRNA

Chain X3

60s ribosomal protein l41