IL_7A01_222

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGUG*CC

Length

6 nucleotides

Bulged bases

7A01|1|e2|U|3993

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7A01_222 not in the Motif Atlas

Geometric match to IL_9D9O_001

Geometric discrepancy: 0.3493

The information below is about IL_9D9O_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25652.1

Basepair signature

cWW-tSS-cWW

Number of instances in this motif group

4

Unit IDs

7A01|1|e2|G|3991
7A01|1|e2|G|3992
7A01|1|e2|U|3993
7A01|1|e2|G|3994
*
7A01|1|e2|C|4009
7A01|1|e2|C|4010

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains