IL_7A01_239
3D structure
- PDB id
- 7A01 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CAUUG*CCAAGCG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7A01_239 not in the Motif Atlas
- Homologous match to IL_8GLP_315
- Geometric discrepancy: 0.1441
- The information below is about IL_8GLP_315
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_56912.1
- Basepair signature
- cWW-cWW-L-R-L-cWW-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
7A01|1|e2|C|4466
7A01|1|e2|A|4467
7A01|1|e2|U|4468
7A01|1|e2|U|4469
7A01|1|e2|G|4470
*
7A01|1|e2|C|4485
7A01|1|e2|C|4486
7A01|1|e2|A|4487
7A01|1|e2|A|4488
7A01|1|e2|G|4489
7A01|1|e2|C|4490
7A01|1|e2|G|4491
Current chains
- Chain e2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain 52
- uL3
- Chain E2
- 60S RIBOSOMAL PROTEIN EL40
- Chain W2
- Uncharacterized protein
- Chain k2
- eL14
- Chain w2
- 60S RIBOSOMAL PROTEIN UL13
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