IL_7A01_239

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAUUG*CCAAGCG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7A01|1|e2|C|4466
7A01|1|e2|A|4467
7A01|1|e2|U|4468
7A01|1|e2|U|4469
7A01|1|e2|G|4470
*
7A01|1|e2|C|4485
7A01|1|e2|C|4486
7A01|1|e2|A|4487
7A01|1|e2|A|4488
7A01|1|e2|G|4489
7A01|1|e2|C|4490
7A01|1|e2|G|4491

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 52

uL3

Chain E2

60S RIBOSOMAL PROTEIN EL40

Chain W2

Uncharacterized protein

Chain k2

eL14

Chain w2

60S RIBOSOMAL PROTEIN UL13