IL_7A01_243

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCAU*AGGCG

Length

9 nucleotides

Bulged bases

7A01|1|e2|C|4720

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7A01_243 not in the Motif Atlas

Geometric match to IL_4WF9_054

Geometric discrepancy: 0.3669

The information below is about IL_4WF9_054

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_74317.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

7A01|1|e2|C|4582
7A01|1|e2|C|4583
7A01|1|e2|A|4584
7A01|1|e2|U|4585
*
7A01|1|e2|A|4717
7A01|1|e2|G|4718
7A01|1|e2|G|4719
7A01|1|e2|C|4720
7A01|1|e2|G|4721

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 52

uL3

Chain w2

60S RIBOSOMAL PROTEIN UL13