IL_7A01_247

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGUAUG*CGAAG

Length

11 nucleotides

Bulged bases

7A01|1|e2|U|4634, 7A01|1|e2|U|4636

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7A01_247 not in the Motif Atlas

Homologous match to IL_5TBW_118

Geometric discrepancy: 0.314

The information below is about IL_5TBW_118

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

7A01|1|e2|U|4632
7A01|1|e2|G|4633
7A01|1|e2|U|4634
7A01|1|e2|A|4635
7A01|1|e2|U|4636
7A01|1|e2|G|4637
*
7A01|1|e2|C|4662
7A01|1|e2|G|4663
7A01|1|e2|A|4664
7A01|1|e2|A|4665
7A01|1|e2|G|4666

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 52

uL3

Chain l2

Ribosomal protein L24

Chain u2

eL31