IL_7A01_250

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAUUAU*AGAAUC

Length

12 nucleotides

Bulged bases

7A01|1|e2|A|4708

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7A01_250 not in the Motif Atlas

Geometric match to IL_5J7L_350

Geometric discrepancy: 0.2681

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

7A01|1|e2|G|4680
7A01|1|e2|A|4681
7A01|1|e2|U|4682
7A01|1|e2|U|4683
7A01|1|e2|A|4684
7A01|1|e2|U|4685
*
7A01|1|e2|A|4705
7A01|1|e2|G|4706
7A01|1|e2|A|4707
7A01|1|e2|A|4708
7A01|1|e2|U|4709
7A01|1|e2|C|4710

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain E2

60S RIBOSOMAL PROTEIN EL40

Chain W2

Uncharacterized protein

Chain w2

60S RIBOSOMAL PROTEIN UL13