IL_7A01_252

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAGC*GAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7A01_252 not in the Motif Atlas

Geometric match to IL_5J7L_283

Geometric discrepancy: 0.1906

The information below is about IL_5J7L_283

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

7A01|1|e2|G|4743
7A01|1|e2|A|4744
7A01|1|e2|G|4745
7A01|1|e2|C|4746
*
7A01|1|e2|G|4954
7A01|1|e2|A|4955
7A01|1|e2|A|4956
7A01|1|e2|C|4957

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain x2

eL33