IL_7A01_257

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGC*GG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7A01_257 not in the Motif Atlas

Geometric match to IL_7KGA_006

Geometric discrepancy: 0.3507

The information below is about IL_7KGA_006

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

7A01|1|e2|C|4775
7A01|1|e2|G|4776
7A01|1|e2|C|4777
*
7A01|1|e2|G|4860
7A01|1|e2|G|4861

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 02

Ribosomal protein L14

Chain w2

60S RIBOSOMAL PROTEIN UL13