IL_7A01_267
3D structure
- PDB id
- 7A01 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UAA*UCGA
- Length
- 7 nucleotides
- Bulged bases
- 7A01|1|h2|G|94
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7A01_267 not in the Motif Atlas
- Homologous match to IL_5TBW_145
- Geometric discrepancy: 0.2808
- The information below is about IL_5TBW_145
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_54650.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
7A01|1|h2|U|64
7A01|1|h2|A|65
7A01|1|h2|A|66
*
7A01|1|h2|U|92
7A01|1|h2|C|93
7A01|1|h2|G|94
7A01|1|h2|A|95
Current chains
- Chain h2
- 5.8S RIBOSOMAL RNA
Nearby chains
- Chain A2
- uL29
- Chain C2
- Ribosomal protein L37
- Chain e2
- Large subunit ribosomal RNA; LSU rRNA
- Chain o2
- Ribosomal protein L26
Coloring options: