IL_7A01_273
3D structure
- PDB id
- 7A01 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UAC*GAAUA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7A01_273 not in the Motif Atlas
- Geometric match to IL_4WF9_012
- Geometric discrepancy: 0.38
- The information below is about IL_4WF9_012
- Detailed Annotation
- Major groove minor groove platform with extra cWW
- Broad Annotation
- Major groove minor groove platform; mini C-loop
- Motif group
- IL_46387.2
- Basepair signature
- cWW-cWW-L-cWW-L
- Number of instances in this motif group
- 4
Unit IDs
7A01|1|K3|U|801
7A01|1|K3|A|802
7A01|1|K3|C|803
*
7A01|1|K3|G|860
7A01|1|K3|A|861
7A01|1|K3|A|862
7A01|1|K3|U|863
7A01|1|K3|A|864
Current chains
- Chain K3
- 18S RIBOSOMAL RNA
Nearby chains
- Chain G3
- Ribosomal protein S11
- Chain J5
- Ribosomal protein S15a
- Chain P3
- 40S RIBOSOMAL PROTEIN ES7
- Chain T3
- Ribosomal protein S23
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