IL_7A01_286
3D structure
- PDB id
- 7A01 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CUCAGUAAC*GUGAACAG
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7A01_286 not in the Motif Atlas
- Geometric match to IL_4WF9_008
- Geometric discrepancy: 0.3017
- The information below is about IL_4WF9_008
- Detailed Annotation
- 9x8 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_84694.2
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
7A01|1|e2|C|81
7A01|1|e2|U|82
7A01|1|e2|C|83
7A01|1|e2|A|84
7A01|1|e2|G|85
7A01|1|e2|U|86
7A01|1|e2|A|87
7A01|1|e2|A|88
7A01|1|e2|C|89
*
7A01|1|e2|G|95
7A01|1|e2|U|96
7A01|1|e2|G|97
7A01|1|e2|A|98
7A01|1|e2|A|99
7A01|1|e2|C|100
7A01|1|e2|A|101
7A01|1|e2|G|102
Current chains
- Chain e2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain 12
- Ribosomal protein L15
- Chain F2
- eL42
- Chain S2
- 60S RIBOSOMAL PROTEIN EL18
- Chain a7
- 60S ribosomal protein L13
- Chain q2
- uL15
Coloring options: