IL_7A01_298

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCCC*GGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7A01_298 not in the Motif Atlas

Geometric match to IL_8C3A_070

Geometric discrepancy: 0.336

The information below is about IL_8C3A_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15698.1

Basepair signature

cWW-tSH-cSH-cWW

Number of instances in this motif group

9

Unit IDs

7A01|1|e2|C|4772
7A01|1|e2|C|4773
7A01|1|e2|C|4774
7A01|1|e2|C|4775
*
7A01|1|e2|G|4861
7A01|1|e2|G|4862
7A01|1|e2|G|4863

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain W2

Uncharacterized protein

Chain w2

60S RIBOSOMAL PROTEIN UL13