IL_7A09_014

3D structure

PDB id

7A09 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human ABCE1-bound 43S pre-initiation complex - State III

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

7A09|1|2|U|172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7A09_014 not in the Motif Atlas

Homologous match to IL_4V88_394

Geometric discrepancy: 0.2245

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

7A09|1|2|G|145
7A09|1|2|G|146
7A09|1|2|A|147
7A09|1|2|U|148
7A09|1|2|A|149
7A09|1|2|A|150
7A09|1|2|C|151
*
7A09|1|2|G|167
7A09|1|2|C|168
7A09|1|2|U|169
7A09|1|2|A|170
7A09|1|2|A|171
7A09|1|2|U|172
7A09|1|2|A|173
7A09|1|2|C|174

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain r

40S ribosomal protein S6

Chain z

40S ribosomal protein S24