IL_7A09_024

3D structure

PDB id

7A09 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human ABCE1-bound 43S pre-initiation complex - State III

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGG*CGAUUC

Length

9 nucleotides

Bulged bases

7A09|1|2|U|428

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7A09_024 not in the Motif Atlas

Homologous match to IL_4V88_404

Geometric discrepancy: 0.1352

The information below is about IL_4V88_404

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11347.3

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

7A09|1|2|G|411
7A09|1|2|G|412
7A09|1|2|G|413
*
7A09|1|2|C|424
7A09|1|2|G|425
7A09|1|2|A|426
7A09|1|2|U|427
7A09|1|2|U|428
7A09|1|2|C|429

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain c

40S ribosomal protein S9

Chain j

40S ribosomal protein S23

Chain q

40S ribosomal protein S4, X isoform