IL_7A09_036

3D structure

PDB id

7A09 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human ABCE1-bound 43S pre-initiation complex - State III

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAG*CCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7A09_036 not in the Motif Atlas

Geometric match to IL_1Y27_001

Geometric discrepancy: 0.1761

The information below is about IL_1Y27_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

7A09|1|2|C|663
7A09|1|2|A|664
7A09|1|2|G|665
*
7A09|1|2|C|1162
7A09|1|2|C|1163
7A09|1|2|G|1164

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain d

40S ribosomal protein S2

Chain j

40S ribosomal protein S23