IL_7A09_040

3D structure

PDB id

7A09 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human ABCE1-bound 43S pre-initiation complex - State III

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAGCG*CCCGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7A09_040 not in the Motif Atlas

Homologous match to IL_4V88_422

Geometric discrepancy: 0.4963

The information below is about IL_4V88_422

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

7A09|1|2|G|692
7A09|1|2|A|693
7A09|1|2|G|694
7A09|1|2|C|695
7A09|1|2|G|696
*
7A09|1|2|C|734
7A09|1|2|C|735
7A09|1|2|C|736
7A09|1|2|G|737
7A09|1|2|C|738

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D

40S ribosomal protein S15a

Chain s

40S ribosomal protein S7