IL_7A09_045

3D structure

PDB id

7A09 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human ABCE1-bound 43S pre-initiation complex - State III

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAC*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7A09_045 not in the Motif Atlas

Geometric match to IL_5CCB_001

Geometric discrepancy: 0.1526

The information below is about IL_5CCB_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

7A09|1|2|G|874
7A09|1|2|A|875
7A09|1|2|C|876
*
7A09|1|2|G|910
7A09|1|2|C|911
7A09|1|2|C|912

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain s

40S ribosomal protein S7