IL_7A09_058

3D structure

PDB id

7A09 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human ABCE1-bound 43S pre-initiation complex - State III

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7A09_058 not in the Motif Atlas

Homologous match to IL_4V88_440

Geometric discrepancy: 0.1264

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

7A09|1|2|G|1168
7A09|1|2|G|1169
7A09|1|2|A|1170
7A09|1|2|G|1171
7A09|1|2|U|1172
7A09|1|2|A|1173
7A09|1|2|U|1174
7A09|1|2|G|1175
*
7A09|1|2|U|1186
7A09|1|2|G|1187
7A09|1|2|A|1188
7A09|1|2|A|1189
7A09|1|2|A|1190
7A09|1|2|C|1191

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain W

60S ribosomal protein L41

Chain j

40S ribosomal protein S23