IL_7A09_085

3D structure

PDB id

7A09 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human ABCE1-bound 43S pre-initiation complex - State III

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGAU*AGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7A09_085 not in the Motif Atlas

Geometric match to IL_4V88_468

Geometric discrepancy: 0.2407

The information below is about IL_4V88_468

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

7A09|1|2|C|1717
7A09|1|2|G|1718
7A09|1|2|A|1719
7A09|1|2|U|1720
*
7A09|1|2|A|1813
7A09|1|2|G|1814
7A09|1|2|A|1815
7A09|1|2|G|1816

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

ATP-binding cassette sub-family E member 1

Chain W

60S ribosomal protein L41

Chain j

40S ribosomal protein S23