IL_7A1G_056

3D structure

PDB id

7A1G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a crosslinked yeast ABCE1-bound 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7A1G_056 not in the Motif Atlas

Homologous match to IL_4V88_440

Geometric discrepancy: 0.0851

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

7A1G|1|2|G|1111
7A1G|1|2|G|1112
7A1G|1|2|A|1113
7A1G|1|2|G|1114
7A1G|1|2|U|1115
7A1G|1|2|A|1116
7A1G|1|2|U|1117
7A1G|1|2|G|1118
*
7A1G|1|2|U|1129
7A1G|1|2|G|1130
7A1G|1|2|A|1131
7A1G|1|2|A|1132
7A1G|1|2|A|1133
7A1G|1|2|C|1134

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain c

40S ribosomal protein S23-A