IL_7A1G_086

3D structure

PDB id

7A1G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a crosslinked yeast ABCE1-bound 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUGA*UUA

Length

7 nucleotides

Bulged bases (A, C, G, U)

1657U

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7A1G_086 not in the Motif Atlas

Geometric match to IL_3C3Z_002

Geometric discrepancy: 0.2631

The information below is about IL_3C3Z_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_64417.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

18

Unit IDs

7A1G|1|2|U|1656
7A1G|1|2|U|1657
7A1G|1|2|G|1658
7A1G|1|2|A|1659
*
7A1G|1|2|U|1742
7A1G|1|2|U|1743
7A1G|1|2|A|1744

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain c

40S ribosomal protein S23-A

Chain x

Translation initiation factor RLI1