IL_7A1G_088

3D structure

PDB id

7A1G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a crosslinked yeast ABCE1-bound 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGAG*CAAA

Length

8 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7A1G_088 not in the Motif Atlas

Geometric match to IL_4V88_471

Geometric discrepancy: 0.0895

The information below is about IL_4V88_471

Detailed Annotation

Double sheared

Broad Annotation

No text annotation

Motif group

IL_09705.11

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

33

Unit IDs

7A1G|1|2|U|1669
7A1G|1|2|G|1670
7A1G|1|2|A|1671
7A1G|1|2|G|1672
*
7A1G|1|2|C|1729
7A1G|1|2|A|1730
7A1G|1|2|A|1731
7A1G|1|2|A|1732

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain T

40S ribosomal protein S6-A

Chain V

40S ribosomal protein S8-A