IL_7A5F_012

3D structure

PDB id

7A5F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the stalled human mitoribosome with P- and E-site mt-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

CGUC*GUG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7A5F_012 not in the Motif Atlas

Homologous match to IL_7RQB_022

Geometric discrepancy: 0.1719

The information below is about IL_7RQB_022

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_05564.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

14

Unit IDs

7A5F|1|A3|C|1948
7A5F|1|A3|G|1949
7A5F|1|A3|U|1950
7A5F|1|A3|C|1951
*
7A5F|1|A3|G|1966
7A5F|1|A3|U|1967
7A5F|1|A3|G|1968

Current chains

Chain A3

16S rRNA

Nearby chains

Chain 23

39S ribosomal protein L34, mitochondrial