IL_7A5F_033

3D structure

PDB id

7A5F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the stalled human mitoribosome with P- and E-site mt-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

GCAA*UAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7A5F_033 not in the Motif Atlas

Geometric match to IL_3V7E_003

Geometric discrepancy: 0.29

The information below is about IL_3V7E_003

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_15698.3

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

10

Unit IDs

7A5F|1|A3|G|2712
7A5F|1|A3|C|2713
7A5F|1|A3|A|2714
7A5F|1|A3|A|2715
*
7A5F|1|A3|U|3104
7A5F|1|A3|A|3105
7A5F|1|A3|C|3106

Current chains

Chain A3

16S rRNA

Nearby chains

Chain 03

39S ribosomal protein L32, mitochondrial

Chain E3

39S ribosomal protein L3, mitochondrial

Chain K3

39S ribosomal protein L13, mitochondrial